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Peptidyl-tRNA hydrolase II (PTH2) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829426, updated on 18-Sep-2024

Summary

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Official Full Name
Peptidyl-tRNA hydrolase II (PTH2) family protein
Primary source
TAIR:AT4G32900
Locus tag
AT4G32900
See related
Araport:AT4G32900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26P21.20; F26P21_20
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (15878569..15881082, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ATHB-8 Neighboring gene GATA transcription factor 9 Neighboring gene nuclear pore complex Nup85-like protein Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342186.1
NM_001342187.1
NM_119443.4
NM_202942.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables aminoacyl-tRNA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Peptidyl-tRNA hydrolase II (PTH2) family protein
NP_567907.4
  • Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT3G03010.2); Has 741 Blast hits to 741 proteins in 284 species: Archae - 203; Bacteria - 0; Metazoa - 192; Fungi - 119; Plants - 86; Viruses - 6; Other Eukaryotes - 135 (source: NCBI BLink).
NP_974671.4
  • Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 933 Blast hits to 933 proteins in 345 species: Archae - 258; Bacteria - 52; Metazoa - 200; Fungi - 129; Plants - 88; Viruses - 8; Other Eukaryotes - 198 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15878569..15881082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202942.5 → NP_974671.4  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974671.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTW6, F4JV77
    Conserved Domains (1) summary
    pfam01981
    Location:79 → 193
    PTH2; Peptidyl-tRNA hydrolase PTH2

  2. NM_001342186.1 → NP_001328355.1  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4F4, O82633
    Conserved Domains (1) summary
    pfam01981
    Location:79 → 165
    PTH2; Peptidyl-tRNA hydrolase PTH2

  3. NM_119443.4 → NP_567907.4  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567907.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JV78
    Conserved Domains (1) summary
    cl19212
    Location:80 → 140
    PTH2_family; Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in ...

  4. NM_001342187.1 → NP_001328354.1  Peptidyl-tRNA hydrolase II (PTH2) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4F4, O82633
    Conserved Domains (1) summary
    pfam01981
    Location:79 → 165
    PTH2; Peptidyl-tRNA hydrolase PTH2
Nucleotide Protein
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