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Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829399, updated on 18-Sep-2024

Summary

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Official Full Name
Sec23/Sec24 protein transport family protein
Primary source
TAIR:AT4G32640
Locus tag
AT4G32640
See related
Araport:AT4G32640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4D11.160; F4D11_160
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Genomic context

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Location:
chromosome: 4
Exon count:
25
Sequence:
Chromosome: 4; NC_003075.7 (15742001..15750862)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Enhancer of polycomb-like transcription factor protein Neighboring gene ArfGap/RecO-like zinc finger domain-containing protein Neighboring gene potassium channel protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125629.5
NM_119416.8

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Sec23/Sec24 protein transport family protein
NP_001119101.5
  • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 66049 Blast hits to 38054 proteins in 1391 species: Archae - 34; Bacteria - 8764; Metazoa - 33131; Fungi - 9611; Plants - 5387; Viruses - 1213; Other Eukaryotes - 7909 (source: NCBI BLink).
NP_194990.5
  • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 66049 Blast hits to 38054 proteins in 1391 species: Archae - 34; Bacteria - 8764; Metazoa - 33131; Fungi - 9611; Plants - 5387; Viruses - 1213; Other Eukaryotes - 7909 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15742001..15750862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125629.5 → NP_001119101.5  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119101.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JV31, O65535, Q9M081
    UniProtKB/TrEMBL
    A0A5S9Y073, A0A654FVE1, R4WCW1
    Conserved Domains (2) summary
    PHA03247
    Location:65 → 345
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:273 → 1076
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  2. NM_119416.8 → NP_194990.5  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194990.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JV31, O65535, Q9M081
    UniProtKB/TrEMBL
    A0A5S9Y073, A0A654FVE1, R4WCW1
    Conserved Domains (2) summary
    PHA03247
    Location:65 → 345
    PHA03247; large tegument protein UL36; Provisional
    COG5028
    Location:273 → 1076
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M081.3

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