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Enhancer of polycomb-like transcription factor protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829397, updated on 18-Sep-2024

Summary

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Official Full Name
Enhancer of polycomb-like transcription factor protein
Primary source
TAIR:AT4G32620
Locus tag
AT4G32620
See related
Araport:AT4G32620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4D11.180; F4D11_180
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (15731443..15737807)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene copper ion binding protein Neighboring gene ArfGap/RecO-like zinc finger domain-containing protein Neighboring gene Sec23/Sec24 protein transport family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
  2. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. Tan LM, et al. EMBO J, 2018 Oct 1. PMID 30104406, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001160809.2
NM_119414.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of protein-containing complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
Enhancer of polycomb-like transcription factor protein
NP_001154281.1
  • Enhancer of polycomb-like transcription factor protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT5G04670.1); Has 578 Blast hits to 531 proteins in 105 species: Archae - 0; Bacteria - 30; Metazoa - 78; Fungi - 45; Plants - 268; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
NP_194988.2
  • Enhancer of polycomb-like transcription factor protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT5G04670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15731443..15737807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119414.4 → NP_194988.2  Enhancer of polycomb-like transcription factor protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194988.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V569, A0A654FUW6, F4JV28
    Conserved Domains (2) summary
    smart00333
    Location:352 → 409
    TUDOR; Tudor domain
    pfam10513
    Location:1141 → 1229
    EPL1; Enhancer of polycomb-like

  2. NM_001160809.2 → NP_001154281.1  Enhancer of polycomb-like transcription factor protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154281.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V468, F4JV27
    Conserved Domains (2) summary
    smart00333
    Location:352 → 409
    TUDOR; Tudor domain
    pfam10513
    Location:1161 → 1229
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
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