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Coatomer, beta subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829275, updated on 18-Sep-2024

Summary

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Official Full Name
Coatomer, beta subunit
Primary source
TAIR:AT4G31480
Locus tag
AT4G31480
See related
Araport:AT4G31480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3L17.50; F3L17_50
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (15263016..15267891)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal L28 family Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Coatomer, beta subunit Neighboring gene cytochrome P450, family 83, subfamily B, polypeptide 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The PII signal transduction protein of Arabidopsis thaliana forms an arginine-regulated complex with plastid N-acetyl glutamate kinase. Chen YM, et al. J Biol Chem, 2006 Mar 3. PMID 16377628
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203951.1
NM_001342082.1
NM_001342083.1
NM_001342084.1
NM_001342085.1
NM_001342086.1
NM_001342087.1
NM_001342088.1
NM_119297.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Coatomer, beta subunit
NP_001320104.1
  • Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1).
NP_194876.2
  • Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1); Has 2798 Blast hits to 2724 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 640; Plants - 392; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15263016..15267891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119297.4 → NP_194876.2  Coatomer, beta subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194876.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  2. NM_001342083.1 → NP_001328341.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4C2

  3. NM_001342084.1 → NP_001328338.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  4. NM_001342085.1 → NP_001328342.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  5. NM_001342086.1 → NP_001328340.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4C2

  6. NM_001342087.1 → NP_001328339.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  7. NM_001342082.1 → NP_001320104.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  8. NM_001342088.1 → NP_001328337.1  Coatomer, beta subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform

  9. NM_001203951.1 → NP_001190880.1  Coatomer, beta subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190880.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV21
    UniProtKB/TrEMBL
    A0A5S9XYC2, A0A654FUZ5
    Conserved Domains (3) summary
    pfam01602
    Location:21 → 469
    Adaptin_N; Adaptin N terminal region
    pfam07718
    Location:669 → 807
    Coatamer_beta_C; Coatomer beta C-terminal region
    pfam14806
    Location:813 → 940
    Coatomer_b_Cpla; Coatomer beta subunit appendage platform
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV21.2

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