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flocculation protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829270, updated on 18-Sep-2024

Summary

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Official Full Name
flocculation protein
Primary source
TAIR:AT4G31430
Locus tag
AT4G31430
See related
Araport:AT4G31430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
(Japanese for nucleus) 4; F3L17.8; KAKU4
Summary
Encodes a plant-specific protein that physically interacts with CRWN1 and its homolog CRWN4 and localizes at the inner nuclear membrane. KAKU4 deforms the nuclear envelope in a dose-dependent manner, in association with nuclear membrane invagination and stack formation.
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Genomic context

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Location:
chromosome: 4
Exon count:
14
Sequence:
Chromosome: 4; NC_003075.7 (15248377..15252837)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene E3 ubiquitin-protein ligase, putative (DUF1644) Neighboring gene Zinc finger protein 622 Neighboring gene transcriptional regulator of RNA polII, SAGA, subunit Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis. Goto C, et al. Plant Cell, 2014 May. PMID 24824484, Free PMC Article
  2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036687.1
NM_119292.1
NM_202924.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within nuclear membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in endosome HDA PubMed 
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
flocculation protein
NP_001031764.1
  • unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567876.1
  • unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974653.1
  • unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15248377..15252837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202924.2 → NP_974653.1  flocculation protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974653.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UT58

  2. NM_001036687.1 → NP_001031764.1  flocculation protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031764.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JS05, O49592, Q949W6
    UniProtKB/TrEMBL
    A0A178UT58

  3. NM_119292.1 → NP_567876.1  flocculation protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567876.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JS05, O49592, Q949W6
    UniProtKB/TrEMBL
    A0A178UT58
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q949W6.1

Gene LinkOut

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