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Zinc finger protein 622 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829269, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger protein 622
Primary source
TAIR:AT4G31420
Locus tag
AT4G31420
See related
Araport:AT4G31420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3L17.9; REI1-LIKE 1; REIL1
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (15245813..15248058, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene E3 ubiquitin-protein ligase, putative (DUF1644) Neighboring gene flocculation protein Neighboring gene transcriptional regulator of RNA polII, SAGA, subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Beine-Golovchuk O, et al. Plant Physiol, 2018 Mar. PMID 29382692, Free PMC Article
  2. REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1 proteins. Schmidt S, et al. Plant Signal Behav, 2014. PMID 24603461, Free PMC Article
  3. The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Schmidt S, et al. Plant Physiol, 2013 Dec. PMID 24038679, Free PMC Article
  4. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article
  5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. REIL1 protein influences cold-induced plant ribosome remodeling and enhances the accumulation of cytosolic ribosome subunits after cold shift either by de novo synthesis or by recycling them from the translating ribosome fraction.
    Title: Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
  2. data consistent with a conserved role in ribosomal maturation
    Title: REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1 proteins.
  3. The A. thaliana REIL paralogs are required specifically in the cold (10C) but not for growth at optimal temperature (20C). [REIL1]
    Title: The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119291.5
NM_202923.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cold acclimation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of ribosome biogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in ribosomal large subunit biogenesis IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Zinc finger protein 622
NP_567875.1
  • Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974652.1
  • Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15245813..15248058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119291.5 → NP_567875.1  Zinc finger protein 622 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567875.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49591, Q56ZP6, Q8H1G5, Q94K64
    UniProtKB/TrEMBL
    A0A178V038, A0A5S9XZT5
    Conserved Domains (3) summary
    PTZ00448
    Location:4 → 47
    PTZ00448; hypothetical protein; Provisional
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:180 → 282
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)

  2. NM_202923.2 → NP_974652.1  Zinc finger protein 622 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974652.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JS04
    Conserved Domains (2) summary
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:180 → 281
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1G5.1

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