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sequence-specific DNA binding transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829254, updated on 15-Jan-2025

Summary

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Official Full Name
sequence-specific DNA binding transcription factor
Primary source
TAIR:AT4G31270
Locus tag
AT4G31270
See related
Araport:AT4G31270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8F16.90; F8F16_90
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (15183188..15184961, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tRNA-Arg Neighboring gene ChaC-like family protein Neighboring gene uncharacterized protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation. Duan CG, et al. Cell Res, 2017 Feb. PMID 27934869, Free PMC Article
  2. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119276.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
sequence-specific DNA binding transcription factor
NP_194855.2
  • sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 462 Blast hits to 461 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 436; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15183188..15184961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119276.3 → NP_194855.2  sequence-specific DNA binding transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194855.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYC3, A0A7G2F286, Q8GWR8
    Conserved Domains (1) summary
    pfam13837
    Location:48 → 86
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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