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NKS1 ubiquitin-associated protein (DUF1068) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829226, updated on 18-Sep-2024

Summary

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Official Symbol
NKS1
Official Full Name
ubiquitin-associated protein (DUF1068)
Primary source
TAIR:AT4G30996
Locus tag
AT4G30996
See related
Araport:AT4G30996
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
NA(+)- AND K(+)-SENSITIVE 1
Summary
NKS1, a plant-specific gene, encodes a 19 kDa endomembrane-localized protein. It is part of SOS independent ion homeostasis regulation pathway.
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Genomic context

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See NKS1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (15101065..15102788)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene ncRNA Neighboring gene Calmodulin-binding protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. NKS1, Na(+)- and K(+)-sensitive 1, regulates ion homeostasis in an SOS-independent pathway in Arabidopsis. Choi W, et al. Phytochemistry, 2011 Apr. PMID 21227472
  2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119249.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within hyperosmotic salinity response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vacuolar sequestering of sodium ion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
ubiquitin-associated protein (DUF1068)
NP_567864.1
  • Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G24290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15101065..15102788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119249.5 → NP_567864.1  ubiquitin-associated protein (DUF1068) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567864.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UW02, A0A654F6G1, Q94AM8
    Conserved Domains (1) summary
    pfam06364
    Location:11 → 170
    DUF1068; Protein of unknown function (DUF1068)
Nucleotide Protein
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