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DNAse I-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829214, updated on 18-Sep-2024

Summary

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Official Full Name
DNAse I-like superfamily protein
Primary source
TAIR:AT4G30900
Locus tag
AT4G30900
See related
Araport:AT4G30900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6I18.190; F6I18_190
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (15039336..15042401)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene ubiquitin-specific protease 24 Neighboring gene Cytosol aminopeptidase family protein Neighboring gene Cytosol aminopeptidase family protein Neighboring gene Ribosomal protein L21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125610.2
NM_001342045.1
NM_119237.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNAse I-like superfamily protein
NP_001119082.1
  • DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_194819.3
  • DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 827 Blast hits to 827 proteins in 297 species: Archae - 8; Bacteria - 571; Metazoa - 2; Fungi - 103; Plants - 24; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15039336..15042401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125610.2 → NP_001119082.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119082.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUX9, A0A384LCE2, A0A5S9XXS1, A0A654FUF1, F4JR41
    Conserved Domains (1) summary
    cd09083
    Location:6 → 293
    EEP-1; Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1

  2. NM_119237.4 → NP_194819.3  DNAse I-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194819.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUX9, A0A384LCE2, A0A5S9XXS1, A0A654FUF1, F4JR41
    Conserved Domains (1) summary
    cd09083
    Location:6 → 293
    EEP-1; Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1

  3. NM_001342045.1 → NP_001329622.1  DNAse I-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUX9, A0A384LCE2, A0A5S9XXS1, A0A654FUF1, F4JR41
    Conserved Domains (1) summary
    cd09083
    Location:6 → 293
    EEP-1; Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1
Nucleotide Protein
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