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RUXF small nuclear ribonucleoprotein F [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829145, updated on 18-Sep-2024

Summary

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Official Symbol
RUXF
Official Full Name
small nuclear ribonucleoprotein F
Primary source
TAIR:AT4G30220
Locus tag
AT4G30220
See related
Araport:AT4G30220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9N11.70; F9N11_70; small nuclear ribonucleoprotein F
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Genomic context

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See RUXF in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (14802931..14804461, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vernalization5/VIN3-like protein Neighboring gene P450 reductase 2 Neighboring gene uncharacterized protein Neighboring gene Syntaxin/t-SNARE family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203943.1
NM_119168.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F
NP_001190872.1
  • small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1).
NP_194751.1
  • small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1); Has 1186 Blast hits to 1186 proteins in 302 species: Archae - 341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants - 126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14802931..14804461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119168.4 → NP_194751.1  small nuclear ribonucleoprotein F [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194751.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SUM2
    UniProtKB/TrEMBL
    A0A654FU79, Q0WT08
    Conserved Domains (1) summary
    cd01722
    Location:7 → 75
    Sm_F; Sm protein F

  2. NM_001203943.1 → NP_001190872.1  small nuclear ribonucleoprotein F [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190872.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JPK5
    Conserved Domains (1) summary
    cd01722
    Location:15 → 83
    Sm_F; Sm protein F
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUM2.1

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