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VEL1 vernalization5/VIN3-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829143, updated on 18-Sep-2024

Summary

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Official Symbol
VEL1
Official Full Name
vernalization5/VIN3-like protein
Primary source
TAIR:AT4G30200
Locus tag
AT4G30200
See related
Araport:AT4G30200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
vernalization5/VIN3-like; vernalization5/VIN3-like 1; VIL2; VIN3-Like 2
Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
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Genomic context

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See VEL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (14786532..14790501, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene H[+]-ATPase 2 Neighboring gene P450 reductase 2 Neighboring gene small nuclear ribonucleoprotein F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5. Kim DH, et al. Proc Natl Acad Sci U S A, 2010 Sep 28. PMID 20837520, Free PMC Article
  2. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Sung S, et al. Genes Dev, 2006 Dec 1. PMID 17114575, Free PMC Article
  3. A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization. De Lucia F, et al. Proc Natl Acad Sci U S A, 2008 Nov 4. PMID 18854416, Free PMC Article
  4. Arabidopsis MSI1 connects LHP1 to PRC2 complexes. Derkacheva M, et al. EMBO J, 2013 Jul 17. PMID 23778966, Free PMC Article
  5. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the repression of MAF5 by VIL2 provides a mechanism to promote flowering in noninductive photoperiods, which contributes to the facultative nature of the Arabidopsis photoperiodic response.
    Title: The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203942.1
NM_119166.5
NM_179140.2
NM_202910.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables methylated histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in negative regulation of gene expression, epigenetic IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of short-day photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IPI
Inferred from Physical Interaction
more info
 PubMed 
involved_in vernalization response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of PcG protein complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of chromatin silencing complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
vernalization5/VIN3-like protein
NP_001190871.1
  • vernalization5/VIN3-like (VEL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: PcG protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1).
NP_194749.1
  • vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 283 Blast hits to 258 proteins in 40 species: Archae - 0; Bacteria - 10; Metazoa - 3; Fungi - 23; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
NP_849471.1
  • vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
NP_974639.1
  • vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14786532..14790501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202910.4 → NP_974639.1  vernalization5/VIN3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974639.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2Q4
    Conserved Domains (2) summary
    smart00060
    Location:356 → 433
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:146 → 264
    PHD_Oberon; PHD - plant homeodomain finger protein

  2. NM_119166.5 → NP_194749.1  vernalization5/VIN3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194749.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFL9, F4JPJ8, F4JPK1, Q2QJG1, Q8GUH6, Q9SUM4
    UniProtKB/TrEMBL
    A0A178V1S1, A0A5S9XX75
    Conserved Domains (2) summary
    smart00060
    Location:368 → 445
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:146 → 264
    PHD_Oberon; PHD - plant homeodomain finger protein

  3. NM_179140.2 → NP_849471.1  vernalization5/VIN3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849471.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2Q4
    Conserved Domains (2) summary
    smart00060
    Location:339 → 416
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:129 → 247
    PHD_Oberon; PHD - plant homeodomain finger protein

  4. NM_001203942.1 → NP_001190871.1  vernalization5/VIN3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190871.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1S1, A0A5S9XX75
    Conserved Domains (2) summary
    smart00060
    Location:368 → 445
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:146 → 264
    PHD_Oberon; PHD - plant homeodomain finger protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUM4.1

Gene LinkOut

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