P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source: TAIR:AT4G30100
Locus tag: AT4G30100
See related: Araport:AT4G30100
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F6G3.130; F6G3_130
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 8

Sequence:: Chromosome: 4; NC_003075.7 (14713400..14720061)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001341992.1

Supported by ESTs:

NM_119156.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables helicase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: P-loop containing nucleoside triphosphate hydrolases superfamily protein

NP_001320087.1

P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G19120.1); Has 5876 Blast hits to 5615 proteins in 1104 species: Archae - 176; Bacteria - 1754; Metazoa - 1255; Fungi - 973; Plants - 640; Viruses - 179; Other Eukaryotes - 899 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14713400..14720061

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001341992.1 → NP_001320087.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FU78, A0A7G2F231, Q9SZW3

Conserved Domains (2) summary

cd18042
Location:630 → 1011

DEXXQc_SETX; DEXXQ-box helicase domain of SETX

pfam13087
Location:988 → 1185

AAA_12; AAA domain
NM_119156.3 → NP_194739.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194739.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FU78, A0A7G2F231, Q9SZW3

Conserved Domains (2) summary

cd18042
Location:630 → 1011

DEXXQc_SETX; DEXXQ-box helicase domain of SETX

pfam13087
Location:988 → 1185

AAA_12; AAA domain