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PA-domain containing subtilase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829125, updated on 18-Sep-2024

Summary

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Official Full Name
PA-domain containing subtilase family protein
Primary source
TAIR:AT4G30020
Locus tag
AT4G30020
See related
Araport:AT4G30020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6G3.50; F6G3_50
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Genomic context

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Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (14677141..14681961)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Dihydropterin pyrophosphokinase / Dihydropteroate synthase Neighboring gene ATP-dependent RNA helicase Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001341988.1
NM_001341989.1
NM_001341990.1
NM_119148.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PA-domain containing subtilase family protein
NP_567839.1
  • PA-domain containing subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 3 (TAIR:AT2G19170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14677141..14681961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119148.4 → NP_567839.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567839.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SZV5
    UniProtKB/TrEMBL
    A0A5S9XXW3, A0A654FUD2, A0A7G2F772
    Conserved Domains (5) summary
    cd04852
    Location:127 → 631
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:374 → 511
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:61 → 124
    Inhibitor_I9; Peptidase inhibitor I9
    pfam06280
    Location:698 → 810
    fn3_5; Fn3-like domain
    cl10459
    Location:535 → 673
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

  2. NM_001341988.1 → NP_001328423.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SZV5
    UniProtKB/TrEMBL
    A0A5S9XXW3, A0A654FUD2, A0A7G2F772
    Conserved Domains (5) summary
    cd04852
    Location:127 → 631
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:374 → 511
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:61 → 124
    Inhibitor_I9; Peptidase inhibitor I9
    pfam06280
    Location:698 → 810
    fn3_5; Fn3-like domain
    cl10459
    Location:535 → 673
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

  3. NM_001341989.1 → NP_001328424.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SZV5
    UniProtKB/TrEMBL
    A0A5S9XXW3, A0A654FUD2, A0A7G2F772
    Conserved Domains (5) summary
    cd04852
    Location:127 → 631
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:374 → 511
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:61 → 124
    Inhibitor_I9; Peptidase inhibitor I9
    pfam06280
    Location:698 → 810
    fn3_5; Fn3-like domain
    cl10459
    Location:535 → 673
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

  4. NM_001341990.1 → NP_001328425.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SZV5
    UniProtKB/TrEMBL
    A0A5S9XXW3, A0A654FUD2, A0A7G2F772
    Conserved Domains (5) summary
    cd04852
    Location:127 → 631
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:374 → 511
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:61 → 124
    Inhibitor_I9; Peptidase inhibitor I9
    pfam06280
    Location:698 → 810
    fn3_5; Fn3-like domain
    cl10459
    Location:535 → 673
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SZV5.1

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