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Alkaline-phosphatase-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829092, updated on 18-Sep-2024

Summary

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Official Full Name
Alkaline-phosphatase-like family protein
Primary source
TAIR:AT4G29710
Locus tag
AT4G29710
See related
Araport:AT4G29710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.220; T16L4_220
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14546785..14547594, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene ncRNA Neighboring gene polyamine oxidase 5 Neighboring gene nucleosome/chromatin assembly factor group C5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119116.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Alkaline-phosphatase-like family protein
NP_194700.1
  • Alkaline-phosphatase-like family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29700.1); Has 956 Blast hits to 954 proteins in 215 species: Archae - 0; Bacteria - 150; Metazoa - 543; Fungi - 112; Plants - 97; Viruses - 6; Other Eukaryotes - 48 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14546785..14547594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119116.2 → NP_194700.1  Alkaline-phosphatase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194700.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V440, Q9SU80
    Conserved Domains (1) summary
    cl23718
    Location:61 → 106
    ALP_like; alkaline phosphatases and sulfatases
Nucleotide Protein
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