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Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829086, updated on 18-Sep-2024

Summary

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Official Full Name
Cytidine/deoxycytidylate deaminase family protein
Primary source
TAIR:AT4G29650
Locus tag
AT4G29650
See related
Araport:AT4G29650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.160; T16L4_160
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14528510..14529514)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Protein kinase superfamily protein Neighboring gene prenylated RAB acceptor 1.C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_119110.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytidine deamination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cytidine/deoxycytidylate deaminase family protein
NP_194694.1
  • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: pyrimidine salvage, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 939 Blast hits to 937 proteins in 395 species: Archae - 0; Bacteria - 794; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14528510..14529514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119110.2 → NP_194694.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194694.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S7S2, Q9ZT31
    UniProtKB/TrEMBL
    A0A654FUG4
    Conserved Domains (3) summary
    TIGR01355
    Location:6 → 245
    cyt_deam_dimer; cytidine deaminase, homodimeric
    pfam08211
    Location:95 → 228
    dCMP_cyt_deam_2; Cytidine and deoxycytidylate deaminase zinc-binding region
    cl00269
    Location:31 → 90
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S7S2.1

Gene LinkOut

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