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Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829084, updated on 18-Sep-2024

Summary

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Official Full Name
Cytidine/deoxycytidylate deaminase family protein
Primary source
TAIR:AT4G29630
Locus tag
AT4G29630
See related
Araport:AT4G29630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.140; T16L4_140
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14522569..14523240)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_119108.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytidine deamination IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cytidine/deoxycytidylate deaminase family protein
NP_194692.1
  • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3200 Blast hits to 3200 proteins in 1316 species: Archae - 54; Bacteria - 2465; Metazoa - 155; Fungi - 71; Plants - 127; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14522569..14523240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119108.1 → NP_194692.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194692.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S847, Q9ZT33
    Conserved Domains (1) summary
    PLN02182
    Location:1 → 223
    PLN02182; cytidine deaminase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S847.1

Gene LinkOut

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