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Cytidine/deoxycytidylate deaminase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829079, updated on 18-Sep-2024

Summary

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Official Full Name
Cytidine/deoxycytidylate deaminase family protein
Primary source
TAIR:AT4G29580
Locus tag
AT4G29580
See related
Araport:AT4G29580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.90; T16L4_90
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (14510147..14512488)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fanconi anemia group E protein FANCE protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytidine deamination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cytidine/deoxycytidylate deaminase family protein
NP_001154274.1
  • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1366 Blast hits to 1366 proteins in 563 species: Archae - 0; Bacteria - 1122; Metazoa - 6; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
NP_194687.1
  • Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1350 Blast hits to 1350 proteins in 560 species: Archae - 0; Bacteria - 1116; Metazoa - 6; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14510147..14512488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160802.2 → NP_001154274.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154274.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JNN8
    Conserved Domains (4) summary
    cd01283
    Location:38 → 136
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    TIGR01355
    Location:7 → 297
    cyt_deam_dimer; cytidine deaminase, homodimeric
    pfam08211
    Location:140 → 279
    dCMP_cyt_deam_2; Cytidine and deoxycytidylate deaminase zinc-binding region
    cl19902
    Location:376 → 427
    DUF626; Protein of unknown function (DUF626)

  2. NM_119103.1 → NP_194687.1  Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194687.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S789, Q9XHQ7
    UniProtKB/TrEMBL
    A0A178UVG1, A0A5S9XX02
    Conserved Domains (1) summary
    PLN02402
    Location:27 → 297
    PLN02402; cytidine deaminase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S789.1

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