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Ribonuclease H-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829030, updated on 18-Sep-2024

Summary

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Official Full Name
Ribonuclease H-like superfamily protein
Primary source
TAIR:AT4G29090
Locus tag
AT4G29090
See related
Araport:AT4G29090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19B15.120; F19B15_120
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14333528..14335255)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene elongation factor Ts family protein Neighboring gene Phospholipase A2 family protein Neighboring gene phytochrome-associated protein 2 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_119053.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ribonuclease H-like superfamily protein
NP_194638.1
  • Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14333528..14335255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119053.1 → NP_194638.1  Ribonuclease H-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194638.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XXM2, Q9SZD8
    Conserved Domains (2) summary
    cd06222
    Location:430 → 550
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    pfam13966
    Location:223 → 319
    zf-RVT; zinc-binding in reverse transcriptase
Nucleotide Protein
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