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Tetraspanin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828998, updated on 18-Sep-2024

Summary

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Official Full Name
Tetraspanin family protein
Primary source
TAIR:AT4G28770
Locus tag
AT4G28770
See related
Araport:AT4G28770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16A16.120; F16A16_120
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (14211855..14213969, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glutaredoxin family protein Neighboring gene LOW PSII ACCUMULATION-like protein Neighboring gene Photosystem I reaction centre subunit IV / PsaE protein Neighboring gene uncharacterized protein Neighboring gene methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) Neighboring gene uncharacterized protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_119021.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Tetraspanin family protein
NP_001190864.1
  • Tetraspanin family protein; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1).
NP_194606.1
  • Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 163 Blast hits to 163 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14211855..14213969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203935.1 → NP_001190864.1  Tetraspanin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190864.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UVF7, F4JM26
    Conserved Domains (1) summary
    pfam00335
    Location:129 → 215
    Tetraspannin; Tetraspanin family

  2. NM_119021.3 → NP_194606.1  Tetraspanin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194606.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SVU4
    UniProtKB/TrEMBL
    A0A178UVF7, A0A5S9XWS4
    Conserved Domains (1) summary
    pfam00335
    Location:80 → 175
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SVU4.1

Gene LinkOut

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