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formin-like protein (DUF1421) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828945, updated on 18-Sep-2024

Summary

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Official Full Name
formin-like protein (DUF1421)
Primary source
TAIR:AT4G28300
Locus tag
AT4G28300
See related
Araport:AT4G28300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26K10.180; F26K10_180
Summary
Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall.
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (14014646..14017097)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING membrane-anchor 2 Neighboring gene uncharacterized protein Neighboring gene LORELEI-LIKE-GPI ANCHORED PROTEIN 3 Neighboring gene microtubule-associated protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene pyrroline-5-carboxylate reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Dorone Y, et al. Cell, 2021 Aug 5. PMID 34233164, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation.
    Title: A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118970.6
NM_202901.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of seed germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to salt IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to water IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in endosperm protein body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
formin-like protein (DUF1421)
NP_194559.2
  • Protein of unknown function (DUF1421); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 69579 Blast hits to 42038 proteins in 1735 species: Archae - 58; Bacteria - 7637; Metazoa - 28439; Fungi - 15188; Plants - 8838; Viruses - 1343; Other Eukaryotes - 8076 (source: NCBI BLink).
NP_974630.1
  • Protein of unknown function (DUF1421); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1421 (InterPro:IPR010820); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14014646..14017097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118970.6 → NP_194559.2  formin-like protein (DUF1421) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194559.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VZR8, Q9M0H8
    Conserved Domains (2) summary
    COG2882
    Location:92 → 173
    FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]
    pfam07223
    Location:146 → 479
    DUF1421; Protein of unknown function (DUF1421)

  2. NM_202901.2 → NP_974630.1  formin-like protein (DUF1421) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974630.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UU73, F4JL78
    Conserved Domains (2) summary
    pfam07223
    Location:88 → 421
    DUF1421; Protein of unknown function (DUF1421)
    pfam15619
    Location:20 → 115
    Lebercilin; Ciliary protein causing Leber congenital amaurosis disease
Nucleotide Protein
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