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hypothetical protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828930, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF789)
Primary source
TAIR:AT4G28150
Locus tag
AT4G28150
See related
Araport:AT4G28150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26K10.30; F26K10_30
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (13977303..13979487, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 6 Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001341905.1
NM_118955.3
NM_179132.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF789)
NP_567798.1
  • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849463.1
  • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 255 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13977303..13979487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118955.3 → NP_567798.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567798.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V234, A0A5S9XWJ8, Q8GUN3
    Conserved Domains (1) summary
    pfam05623
    Location:8 → 272
    DUF789; Protein of unknown function (DUF789)

  2. NM_001341905.1 → NP_001328078.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3K4

  3. NM_179132.1 → NP_849463.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849463.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V234, A0A5S9XWJ8, Q0WUN1
    Conserved Domains (1) summary
    pfam05623
    Location:8 → 270
    DUF789; Protein of unknown function (DUF789)
Nucleotide Protein
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