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P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828913, updated on 18-Sep-2024

Summary

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Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT4G28000
Locus tag
AT4G28000
See related
Araport:AT4G28000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T13J8.110; T13J8_110
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (13925338..13929527)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene trichohyalin-like protein (DUF3444) Neighboring gene YGGT family protein Neighboring gene NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene tRNA-thr(GGU) m(6)t(6)A37 methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_194529.4
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52882.1); Has 39856 Blast hits to 37451 proteins in 3236 species: Archae - 1544; Bacteria - 17865; Metazoa - 4891; Fungi - 3526; Plants - 3328; Viruses - 34; Other Eukaryotes - 8668 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13925338..13929527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341899.1 → NP_001328776.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5P0, A0A5S9XWY4, A0A654FTF6
    Conserved Domains (2) summary
    pfam17862
    Location:709 → 752
    AAA_lid_3; AAA+ lid domain
    cl38936
    Location:521 → 686
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_118938.4 → NP_194529.4  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194529.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XWY4, A0A654FTF6, F4JKF8
    Conserved Domains (2) summary
    smart00382
    Location:553 → 687
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:555 → 686
    AAA; ATPase family associated with various cellular activities (AAA)

  3. NM_001341900.1 → NP_001328775.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5P1, A0A5S9XWY4, A0A654FTF6
Nucleotide Protein
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