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PEL1 Eukaryotic release factor 1 (eRF1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828876, updated on 18-Sep-2024

Summary

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Official Symbol
PEL1
Official Full Name
Eukaryotic release factor 1 (eRF1) family protein
Primary source
TAIR:AT4G27650
Locus tag
AT4G27650
See related
Araport:AT4G27650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PELOTA; T29A15.140; T29A15_140
Summary
Encodes Arabidopsis homolog of Drosophila pelota protein.
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Genomic context

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See PEL1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Sequence:
Chromosome: 4; NC_003075.7 (13803268..13808031, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GPCR-type G protein 2 Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis. Vigh ML, et al. Nucleic Acids Res, 2022 Feb 22. PMID 35037064, Free PMC Article
  2. PELOTA and HBS1 suppress co-translational messenger RNA decay in Arabidopsis. Guo R, et al. Plant Direct, 2023 Dec. PMID 38149303, Free PMC Article
  3. mRNA surveillance complex PELOTA-HBS1 regulates phosphoinositide-dependent protein kinase1 and plant growth. Kong W, et al. Plant Physiol, 2021 Aug 3. PMID 33930167, Free PMC Article
  4. The No-go decay system degrades plant mRNAs that contain a long A-stretch in the coding region. Szádeczky-Kardoss I, et al. Plant Sci, 2018 Oct. PMID 30107878
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis.
    Title: Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis.
  2. mRNA surveillance complex PELOTA-HBS1 regulates phosphoinositide-dependent protein kinase1 and plant growth.
    Title: mRNA surveillance complex PELOTA-HBS1 regulates phosphoinositide-dependent protein kinase1 and plant growth.
Submit: New GeneRIF Correction

General gene information

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NM_001341877.1
NM_118901.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of mRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, no-go decay IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, non-stop decay IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Eukaryotic release factor 1 (eRF1) family protein
NP_194495.3
  • PELOTA (PEL1); FUNCTIONS IN: translation release factor activity; INVOLVED IN: meiosis, translational termination, translation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT3G58390.1); Has 776 Blast hits to 774 proteins in 323 species: Archae - 255; Bacteria - 0; Metazoa - 140; Fungi - 159; Plants - 51; Viruses - 1; Other Eukaryotes - 170 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13803268..13808031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341876.1 → NP_001329759.1  Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FPG8, Q9ZT87
    UniProtKB/TrEMBL
    A0A178V176, A0A5S9XX52
    Conserved Domains (1) summary
    cl30759
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

  2. NM_118901.5 → NP_194495.3  Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194495.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FPG8, Q9ZT87
    UniProtKB/TrEMBL
    A0A178V176, A0A5S9XX52
    Conserved Domains (1) summary
    cl30759
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]

  3. NM_001341877.1 → NP_001329760.1  Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FPG8, Q9ZT87
    UniProtKB/TrEMBL
    A0A178V176, A0A5S9XX52
    Conserved Domains (1) summary
    cl30759
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZT87.1

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