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Putative pyridoxal phosphate-dependent enzyme, YBL036C type [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828793, updated on 18-Sep-2024

Summary

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Official Full Name
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
Primary source
TAIR:AT4G26860
Locus tag
AT4G26860
See related
Araport:AT4G26860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10M23.200; F10M23_200
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (13503053..13504876, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene small ubiquitin-like modifier 1 Neighboring gene GDP-L-galactose phosphorylase 1 Neighboring gene Class II aminoacyl-tRNA and biotin synthetases superfamily protein Neighboring gene Stigma-specific Stig1 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203921.1
NM_118820.7

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
NP_001190850.1
  • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2).
NP_567760.4
  • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT1G11930.2); Has 7173 Blast hits to 7173 proteins in 2384 species: Archae - 21; Bacteria - 4279; Metazoa - 130; Fungi - 133; Plants - 56; Viruses - 0; Other Eukaryotes - 2554 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13503053..13504876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118820.7 → NP_567760.4  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567760.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V151, A0A5S9XW63, A0A7G2F2Q2, Q94JS1
    Conserved Domains (1) summary
    cd06822
    Location:14 → 235
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

  2. NM_001203921.1 → NP_001190850.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190850.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V151, A0A5S9XW63, F4JVS4
    Conserved Domains (1) summary
    cd06822
    Location:14 → 245
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
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