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SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828788, updated on 18-Sep-2024

Summary

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Official Full Name
SWIB/MDM2 domain superfamily protein
Primary source
TAIR:AT4G26810
Locus tag
AT4G26810
See related
Araport:AT4G26810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10M23.150; F10M23_150
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (13492078..13493015, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Phosphatidate cytidylyltransferase family protein Neighboring gene Co-chaperone GrpE family protein Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene GrpE-like protein Neighboring gene O-Glycosyl hydrolases family 17 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001125592.1
NM_118815.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SWIB/MDM2 domain superfamily protein
NP_001119064.1
  • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_194411.1
  • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13492078..13493015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118815.4 → NP_194411.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194411.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX52, A0A5S9XW53, A0A7G2F6D8, Q9SZ21
    Conserved Domains (1) summary
    pfam02201
    Location:24 → 95
    SWIB; SWIB/MDM2 domain

  2. NM_001125592.1 → NP_001119064.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119064.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX52, A0A5S9XW53, A0A7G2F6D8, Q9SZ21
    Conserved Domains (1) summary
    pfam02201
    Location:24 → 95
    SWIB; SWIB/MDM2 domain
Nucleotide Protein
Heading Accession and Version

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