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F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828740, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like/FBD-like domains-containing protein
Primary source
TAIR:AT4G26340
Locus tag
AT4G26340
See related
Araport:AT4G26340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25K17.150; T25K17_150
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (13324130..13325590)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118767.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box/RNI-like/FBD-like domains-containing protein
NP_194364.2
  • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26350.1); Has 2167 Blast hits to 2117 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 45; Fungi - 0; Plants - 2120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13324130..13325590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118767.3 → NP_194364.2  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194364.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H1R7, Q9STQ1
    UniProtKB/TrEMBL
    A0A178V5F0, A0A5S9XWX2
    Conserved Domains (4) summary
    smart00579
    Location:348 → 419
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:130 → 151
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:151 → 176
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:2 → 38
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1R7.1

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