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LOC8287204 sister-chromatid cohesion protein 3 [ Ricinus communis (castor bean) ]

Gene ID: 8287204, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8287204
Gene description
sister-chromatid cohesion protein 3
Locus tag
RCOM_0557120
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8287204 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 1 NC_063256.1 (7129786..7138220, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994367.1 (366395..374903)

Chromosome 1 - NC_063256.1Genomic Context describing neighboring genes Neighboring gene nodulin homeobox Neighboring gene cytochrome c oxidase subunit 5C Neighboring gene uncharacterized LOC125370853 Neighboring gene NPL4-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister-chromatid cohesion protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063256.1 Reference ASM1957865v1

    Range
    7129786..7138220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048377856.1 → XP_048233813.1  sister-chromatid cohesion protein 3 isoform X1

  2. XM_002520660.4 → XP_002520706.1  sister-chromatid cohesion protein 3 isoform X2

    See identical proteins and their annotated locations for XP_002520706.1

    UniProtKB/TrEMBL
    B9S3Y7
    Conserved Domains (2) summary
    cd01671
    Location:860 → 903
    CARD; Caspase activation and recruitment domain: a protein-protein interaction domain
    pfam08514
    Location:143 → 248
    STAG; STAG domain
Nucleotide Protein
Heading Accession and Version

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