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CIL CCT motif family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828705, updated on 18-Sep-2024

Summary

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Official Symbol
CIL
Official Full Name
CCT motif family protein
Primary source
TAIR:AT4G25990
Locus tag
AT4G25990
See related
Araport:AT4G25990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20B18.100; F20B18_100
Summary
chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
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Genomic context

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See CIL in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (13191085..13194124, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-glycoprotein 2 Neighboring gene phosphatidylserine decarboxylase 3 Neighboring gene peroxidase superfamily protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Peroxidase superfamily protein Neighboring gene 4/1 protein short form protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana. Gawroński P, et al. Plant J, 2021 Feb. PMID 33119927
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
    Title: CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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NM_001341771.1
NM_118732.2
NM_179114.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CCT motif family protein
NP_567737.1
  • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849445.1
  • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 1342 Blast hits to 1342 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1336; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13191085..13194124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118732.2 → NP_567737.1  CCT motif family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567737.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XWA9, A0A654FT00, Q94KJ2
    Conserved Domains (1) summary
    pfam06203
    Location:341 → 384
    CCT; CCT motif

  2. NM_001341771.1 → NP_001328403.1  CCT motif family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XWA9, Q9SZH3
    Conserved Domains (1) summary
    pfam06203
    Location:341 → 377
    CCT; CCT motif

  3. NM_179114.2 → NP_849445.1  CCT motif family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849445.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XWA9, C0SVJ8
    Conserved Domains (1) summary
    pfam06203
    Location:341 → 399
    CCT; CCT motif
Nucleotide Protein
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