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PUM6 pumilio 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828694, updated on 18-Sep-2024

Summary

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Official Symbol
PUM6
Official Full Name
pumilio 6
Primary source
TAIR:AT4G25880
Locus tag
AT4G25880
See related
Araport:AT4G25880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APUM6; F14M19.160; F14M19_160; pumilio 6
Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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Genomic context

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See PUM6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (13154708..13159382)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S acidic ribosomal protein family Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene NFU domain protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant PUF RNA-binding proteins: A wealth of diversity for post-transcriptional gene regulation. Joshna CR, et al. Plant Sci, 2020 Aug. PMID 32563454
  2. Molecular characterization of Arabidopsis thaliana PUF proteins--binding specificity and target candidates. Francischini CW, et al. FEBS J, 2009 Oct. PMID 19682068
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036643.2
NM_001341767.1
NM_001341768.1
NM_118721.3
NM_202889.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
pumilio 6
NP_001031720.1
  • pumilio 6 (PUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567733.1
  • pumilio 6 (PUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974618.2
  • pumilio 6 (PUM6); FUNCTIONS IN: RNA binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 3872 Blast hits to 2064 proteins in 251 species: Archae - 0; Bacteria - 18; Metazoa - 936; Fungi - 1249; Plants - 864; Viruses - 0; Other Eukaryotes - 805 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13154708..13159382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118721.3 → NP_567733.1  pumilio 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567733.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2M6, Q2V3E7, Q3E9W4, Q9C5E7, Q9SVZ7
    UniProtKB/TrEMBL
    A0A178V2V1
    Conserved Domains (2) summary
    cd07920
    Location:527 → 848
    Pumilio; Pumilio-family RNA binding domain
    COG5099
    Location:71 → 850
    COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

  2. NM_202889.3 → NP_974618.2  pumilio 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974618.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2V1
    Conserved Domains (2) summary
    cd07920
    Location:527 → 842
    Pumilio; Pumilio-family RNA binding domain
    COG5099
    Location:71 → 844
    COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

  3. NM_001036643.2 → NP_001031720.1  pumilio 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031720.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V537
    Conserved Domains (2) summary
    cd07920
    Location:527 → 842
    Pumilio; Pumilio-family RNA binding domain
    COG5099
    Location:71 → 844
    COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]

  4. NM_001341767.1 → NP_001329827.1  pumilio 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V537

  5. NM_001341768.1 → NP_001329828.1  pumilio 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2M6, Q2V3E7, Q3E9W4, Q9C5E7, Q9SVZ7
    UniProtKB/TrEMBL
    A0A178V2V1
    Conserved Domains (2) summary
    cd07920
    Location:527 → 848
    Pumilio; Pumilio-family RNA binding domain
    COG5099
    Location:71 → 850
    COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C5E7.1

Gene LinkOut

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