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PPPDE putative thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828673, updated on 18-Sep-2024

Summary

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Official Full Name
PPPDE putative thiol peptidase family protein
Primary source
TAIR:AT4G25680
Locus tag
AT4G25680
See related
Araport:AT4G25680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
L73G19.60; L73G19_60
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (13087973..13090161)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ACD1-like protein Neighboring gene PPPDE putative thiol peptidase family protein Neighboring gene stress response NST1-like protein Neighboring gene stress response NST1-like protein Neighboring gene beta-hydroxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118700.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PPPDE putative thiol peptidase family protein
NP_194298.1
  • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G25660.1); Has 754 Blast hits to 754 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 56; Plants - 348; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13087973..13090161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118700.3 → NP_194298.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194298.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7Y9, A0A7G2F0M9, Q9SZZ6
    Conserved Domains (1) summary
    pfam05903
    Location:2 → 154
    Peptidase_C97; PPPDE putative peptidase domain
Nucleotide Protein
Heading Accession and Version

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