Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Oxoglutarate/iron-dependent oxygenase
Primary source: TAIR:AT4G25600
Locus tag: AT4G25600
See related: Araport:AT4G25600
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: M7J2.30; M7J2_30
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 7

Sequence:: Chromosome: 4; NC_003075.7 (13060612..13062680)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001341755.1

Supported by ESTs:

NM_001341756.1

Supported by ESTs:

NM_118692.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables L-ascorbic acid binding	IEA Inferred from Electronic Annotation more info
enables iron ion binding	IEA Inferred from Electronic Annotation more info
enables procollagen-proline 4-dioxygenase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Oxoglutarate/iron-dependent oxygenase

NP_194290.2

Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1); Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0; Bacteria - 285; Metazoa - 424; Fungi - 0; Plants - 372; Viruses - 8; Other Eukaryotes - 104 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

13060612..13062680

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001341754.1 → NP_001329146.1 Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V0P1, A0A1P8B6U0
NM_118692.3 → NP_194290.2 Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194290.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O65602, Q8GXT7, Q9M0K1

UniProtKB/TrEMBL

A0A5S9XXY9, A0A654FSQ1

Conserved Domains (2) summary

smart00254
Location:251 → 291

ShKT; ShK toxin domain

cl21496
Location:159 → 237

2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
NM_001341755.1 → NP_001329147.1 Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V0P1, A0A1P8B6T8
NM_001341756.1 → NP_001329145.1 Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V0P1, A0A1P8B6T9