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SAP10 stress-associated protein 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828641, updated on 18-Sep-2024

Summary

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Official Symbol
SAP10
Official Full Name
stress-associated protein 10
Primary source
TAIR:AT4G25380
Locus tag
AT4G25380
See related
Araport:AT4G25380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana stress-associated protein 10; AtSAP10; stress-associated protein 10; T30C3.50; T30C3_50
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Genomic context

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See SAP10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (12975848..12976638, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 18 Neighboring gene Double Clp-N motif protein Neighboring gene Protein kinase superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtSAP10 is a potentially useful candidate gene for engineering tolerance to heavy metals and to abiotic stress in cultivated plants
    Title: A novel stress-associated protein 'AtSAP10' from Arabidopsis thaliana confers tolerance to nickel, manganese, zinc, and high temperature stress.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118670.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to manganese ion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to metal ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to nickel cation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to zinc ion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
stress-associated protein 10
NP_194268.1
  • stress-associated protein 10 (SAP10); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2); Has 1084 Blast hits to 1007 proteins in 145 species: Archae - 2; Bacteria - 0; Metazoa - 503; Fungi - 9; Plants - 445; Viruses - 6; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12975848..12976638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118670.2 → NP_194268.1  stress-associated protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194268.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9STJ9
    UniProtKB/TrEMBL
    A0A178V1M6, A0A5S9XVU5, A0A654FSL9, A0A7G2F7A7
    Conserved Domains (2) summary
    smart00154
    Location:71 → 108
    ZnF_AN1; AN1-like Zinc finger
    pfam01754
    Location:8 → 31
    zf-A20; A20-like zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9STJ9.1

Gene LinkOut

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