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Double Clp-N motif protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828640, updated on 18-Sep-2024

Summary

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Official Full Name
Double Clp-N motif protein
Primary source
TAIR:AT4G25370
Locus tag
AT4G25370
See related
Araport:AT4G25370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30C3.40; T30C3_40
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (12972685..12974963)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene EXS (ERD1/XPR1/SYG1) family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 18 Neighboring gene stress-associated protein 10 Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins. Sjögren LL, et al. Plant Cell, 2011 Jan. PMID 21266658, Free PMC Article
  2. Characterization of the accessory protein ClpT1 from Arabidopsis thaliana: oligomerization status and interaction with Hsp100 chaperones. Colombo CV, et al. BMC Plant Biol, 2014 Aug 24. PMID 25149061, Free PMC Article
  3. Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts. Kim J, et al. Plant Cell, 2015 May. PMID 25921872, Free PMC Article
  4. ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. Nishimura K, et al. Plant Cell, 2013 Jun. PMID 23898032, Free PMC Article
  5. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. Peltier JB, et al. J Biol Chem, 2004 Feb 6. PMID 14593120

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. In vivo and in vitro assays showed that ClpT1 and ClpT2 can independently interact with the single ClpP ring and ClpPR core, but not with the single ClpR ring.
    Title: Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.
  2. The accessory protein ClpT1 interacts with the chloroplastic Hsp100 chaperones ClpC2 and ClpD and tightly modulates the ATPase activity of the latter.
    Title: Characterization of the accessory protein ClpT1 from Arabidopsis thaliana: oligomerization status and interaction with Hsp100 chaperones.
  3. Data show that ClpS1 (AT1G68660) interacts with plastid ClpC1 (AT5G50920), ClpC2 (AT3G48870), but not with ClpT1 (AT4G25370) or ClpT2 (AT4G12060).
    Title: ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.
  4. ClpT1 and ClpT2 regulate the assembly of the Clp proteolytic core.
    Title: Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.
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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118669.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in cytosol HDA PubMed 
located_in plastid stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
Double Clp-N motif protein
NP_567718.1
  • Double Clp-N motif protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: thylakoid, plastid stroma, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G12060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12972685..12974963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118669.3 → NP_567718.1  Double Clp-N motif protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567718.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93WL3, Q9STK0
    UniProtKB/TrEMBL
    A0A178UW23, A0A5S9XW36, A0A654FSL7
    Conserved Domains (1) summary
    CHL00095
    Location:85 → 214
    clpC; Clp protease ATP binding subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93WL3.1

Gene LinkOut

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