DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: DNA-binding storekeeper protein-related transcriptional regulator
Primary source: TAIR:AT4G25210
Locus tag: AT4G25210
See related: Araport:AT4G25210
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F24A6.50; F24A6_50
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (12918222..12919827)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data suggest that presence of mediator complex subunits MED10a, MED28, and MED32 or changes in redox state affect DNA-binding capacity of GeBPL (GLABROUS1/GL1 enhancer-binding protein-like). [GeBPL] [GLABROUS1/GL1 enhancer-binding protein-like]
Title: Biochemical and redox characterization of the mediator complex and its associated transcription factor GeBPL, a GLABROUS1 enhancer binding protein.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_118653.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
part_of mediator complex	IDA Inferred from Direct Assay more info	PubMed
located_in nucleolus	HDA more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: DNA-binding storekeeper protein-related transcriptional regulator

NP_194251.1

DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00130.1); Has 6385 Blast hits to 3618 proteins in 495 species: Archae - 4; Bacteria - 719; Metazoa - 1874; Fungi - 800; Plants - 494; Viruses - 72; Other Eukaryotes - 2422 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

12918222..12919827

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_118653.4 → NP_194251.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194251.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8H0X7, Q94F05, Q9SB42

UniProtKB/TrEMBL

A0A178V1T9, A0A5S9XVN7, A0A654FSK0

Conserved Domains (1) summary

pfam04504
Location:145 → 237

DUF573; Protein of unknown function, DUF573