U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATGP4 Ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828602, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ATGP4
Official Full Name
Ubiquitin family protein
Primary source
TAIR:AT4G24990
Locus tag
AT4G24990
See related
Araport:AT4G24990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M23.130; F13M23_130
Summary
geranylgeranylated protein ATGP4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATGP4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (12849651..12851810, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene miscRNA Neighboring gene alpha-amylase-like protein Neighboring gene Nodulin MtN3 family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis membrane-anchored ubiquitin-fold (MUB) proteins localize a specific subset of ubiquitin-conjugating (E2) enzymes to the plasma membrane. Dowil RT, et al. J Biol Chem, 2011 Apr 29. PMID 21345795, Free PMC Article
  2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001341720.1
NM_118631.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ubiquitin family protein
NP_194229.1
  • ATGP4; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 4 precursor (TAIR:AT3G26980.1); Has 159 Blast hits to 159 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12849651..12851810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118631.3 → NP_194229.1  Ubiquitin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194229.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SW27, Q9ZRD4
    UniProtKB/TrEMBL
    A0A178V221, A0A5S9XVL6, A0A654FSL6
    Conserved Domains (1) summary
    pfam13881
    Location:5 → 116
    Rad60-SLD_2; Ubiquitin-2 like Rad60 SUMO-like

  2. NM_001341720.1 → NP_001329044.1  Ubiquitin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SW27, Q9ZRD4
    UniProtKB/TrEMBL
    A0A178V221, A0A5S9XVL6, A0A654FSL6
    Conserved Domains (1) summary
    pfam13881
    Location:5 → 116
    Rad60-SLD_2; Ubiquitin-2 like Rad60 SUMO-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SW27.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools