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pachytene checkpoint-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828573, updated on 18-Sep-2024

Summary

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Official Full Name
pachytene checkpoint-like protein
Primary source
TAIR:AT4G24710
Locus tag
AT4G24710
See related
Araport:AT4G24710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22K18.90; F22K18_90
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Genomic context

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Location:
chromosome: 4
Exon count:
14
Sequence:
Chromosome: 4; NC_003075.7 (12745547..12749134, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene modifier of snc1 Neighboring gene ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein Neighboring gene uncharacterized protein Neighboring gene high-affinity nitrate transporter-like protein Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. State changes of the HORMA protein ASY1 are mediated by an interplay between its closure motif and PCH2. Yang C, et al. Nucleic Acids Res, 2020 Nov 18. PMID 32558910, Free PMC Article
  2. Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers. Lambing C, et al. PLoS Genet, 2015 Jul. PMID 26182244, Free PMC Article
  3. COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1. Balboni M, et al. Curr Biol, 2020 Nov 2. PMID 32857973
  4. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1.
    Title: COMET Functions as a PCH2 Cofactor in Regulating the HORMA Domain Protein ASY1.
  2. State changes of the HORMA protein ASY1 are mediated by an interplay between its closure motif and PCH2.
    Title: State changes of the HORMA protein ASY1 are mediated by an interplay between its closure motif and PCH2.
  3. PCH2 is required for remodelling of the chromosome axis during synaptonemal complex formation. [PCH2]
    Title: Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001341695.1
NM_001341697.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chiasma assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in homologous chromosome pairing at meiosis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within synaptonemal complex assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in synaptonemal complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
pachytene checkpoint-like protein
NP_001320058.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12745547..12749134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118604.5 → NP_194202.4  pachytene checkpoint-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX56, A0A1P8B3X3, A0A654FSG2
    Conserved Domains (1) summary
    cd19508
    Location:163 → 361
    RecA-like_Pch2-like; ATPase domain of Pachytene checkpoint 2 (Pch2) and similar ATPase domains

  2. NM_001341696.1 → NP_001328224.1  pachytene checkpoint-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3Y3

  3. NM_001341695.1 → NP_001320058.1  pachytene checkpoint-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JR10, Q67ZT1, Q8H1F9, Q9SB66
    UniProtKB/TrEMBL
    A0A178UX56

  4. NM_001341697.1 → NP_001328225.1  pachytene checkpoint-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3Y3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1F9.1

Gene LinkOut

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