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GH9A3 glycosyl hydrolase 9A3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828527, updated on 18-Sep-2024

Summary

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Official Symbol
GH9A3
Official Full Name
glycosyl hydrolase 9A3
Primary source
TAIR:AT4G24260
Locus tag
AT4G24260
See related
Araport:AT4G24260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATGH9A3; AtKOR3; glycosyl hydrolase 9A3; KOR3; T22A6.90; T22A6_90
Summary
Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.
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Genomic context

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See GH9A3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (12577630..12580415, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 7 Neighboring gene Seven transmembrane MLO family protein Neighboring gene homeobox protein Neighboring gene EMBRYO DEFECTIVE 140

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis endo-1,4-beta-glucanases are involved in the formation of root syncytia induced by Heterodera schachtii. Wieczorek K, et al. Plant J, 2008 Jan. PMID 18069944
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341656.1
NM_001341657.1
NM_118559.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to nematode IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9A3
NP_194157.1
  • glycosyl hydrolase 9A3 (GH9A3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A1 (TAIR:AT5G49720.1); Has 1666 Blast hits to 1648 proteins in 232 species: Archae - 2; Bacteria - 516; Metazoa - 186; Fungi - 17; Plants - 908; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12577630..12580415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118559.2 → NP_194157.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194157.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9STW8
    UniProtKB/TrEMBL
    A0A178UVE8
    Conserved Domains (1) summary
    cl02959
    Location:112 → 588
    Glyco_hydro_9; Glycosyl hydrolase family 9

  2. NM_001341656.1 → NP_001329771.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8Q5

  3. NM_001341657.1 → NP_001329770.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8R5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9STW8.1

Gene LinkOut

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