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ARF9 auxin response factor 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828498, updated on 18-Sep-2024

Summary

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Official Symbol
ARF9
Official Full Name
auxin response factor 9
Primary source
TAIR:AT4G23980
Locus tag
AT4G23980
See related
Araport:AT4G23980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
auxin response factor 9; T32A16.150; T32A16_150
Summary
Encodes auxin response factor 9 (ARF9).
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Genomic context

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See ARF9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Sequence:
Chromosome: 4; NC_003075.7 (12451143..12455369)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Galactose-binding protein Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene cellulose synthase like G3 Neighboring gene cellulose synthase like G2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Activation and repression of transcription by auxin-response factors. Ulmasov T, et al. Proc Natl Acad Sci U S A, 1999 May 11. PMID 10318972, Free PMC Article
  2. Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split firefly luciferase complementation. Li JF, et al. PLoS One, 2011. PMID 22096563, Free PMC Article
  3. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Varaud E, et al. Plant Cell, 2011 Mar. PMID 21421811, Free PMC Article
  4. Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis. Piya S, et al. Front Plant Sci, 2014. PMID 25566309, Free PMC Article
  5. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux T, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734647, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036629.2
NM_118530.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
auxin response factor 9
NP_001031706.1
  • auxin response factor 9 (ARF9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_194129.1
  • auxin response factor 9 (ARF9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 2797 Blast hits to 2432 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 2; Plants - 2739; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12451143..12455369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118530.5 → NP_194129.1  auxin response factor 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194129.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22991, Q0WRN8, Q2V3F5, Q56X14, Q9XED8
    UniProtKB/TrEMBL
    A0A178V403, A0A5S9XVX8, A0A654FS80
    Conserved Domains (3) summary
    pfam02309
    Location:506 → 601
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:116 → 218
    B3; B3 DNA binding domain
    pfam06507
    Location:242 → 321
    Auxin_resp; Auxin response factor

  2. NM_001036629.2 → NP_001031706.1  auxin response factor 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031706.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FS80
    Conserved Domains (3) summary
    pfam02309
    Location:504 → 599
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:116 → 218
    B3; B3 DNA binding domain
    pfam06507
    Location:242 → 321
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XED8.1

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