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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828483, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT4G23840
Locus tag
AT4G23840
See related
Araport:AT4G23840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT4G23830; T32A16.10; T32A16_10
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (12400177..12403487)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 24 Neighboring gene HMG (high mobility group) box protein Neighboring gene WRKY family transcription factor Neighboring gene Pectin lyase-like superfamily protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene PHD finger protein-like protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection. Toribio R, et al. Plant J, 2021 Jul. PMID 33899980
  2. A novel eIF4E-interacting protein that forms non-canonical translation initiation complexes. Toribio R, et al. Nat Plants, 2019 Dec. PMID 31819221, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection.
    Title: High overexpression of CERES, a plant regulator of translation, induces different phenotypical defence responses during TuMV infection.
  2. CERES (At4g23840) is a eIF4E-interacting protein and contains an LRR domain and a canonical eIF4E-binding site.
    Title: A novel eIF4E-interacting protein that forms non-canonical translation initiation complexes.
Submit: New GeneRIF Correction

General gene information

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NM_118515.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_194115.3
  • Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat family protein (TAIR:AT1G15740.1); Has 13188 Blast hits to 8222 proteins in 561 species: Archae - 2; Bacteria - 5781; Metazoa - 2271; Fungi - 110; Plants - 3199; Viruses - 40; Other Eukaryotes - 1785 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12400177..12403487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118515.4 → NP_194115.3  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194115.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1M3, A0A5S9XW45, A0A7G2F0F5, Q8L4C7
    Conserved Domains (4) summary
    cd09293
    Location:85 → 238
    AMN1; Antagonist of mitotic exit network protein 1
    cd00116
    Location:291 → 490
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:252 → 273
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:299 → 323
    LRR_AMN1; leucine-rich repeat [structural motif]
Nucleotide Protein
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