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TBL24 TRICHOME BIREFRINGENCE-LIKE 24 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828479, updated on 18-Sep-2024

Summary

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Official Symbol
TBL24
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 24
Primary source
TAIR:AT4G23790
Locus tag
AT4G23790
See related
Araport:AT4G23790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9D16.260; F9D16_260; TRICHOME BIREFRINGENCE-LIKE 24
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL24 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (12387631..12389908)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene HMG (high mobility group) box protein Neighboring gene WRKY family transcription factor Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the DUF231 Family are O-Acetyltransferases Catalyzing 2-O- and 3-O-Acetylation of Mannan. Zhong R, et al. Plant Cell Physiol, 2018 Nov 1. PMID 30102392
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_118510.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 24
NP_194110.2
  • TRICHOME BIREFRINGENCE-LIKE 24 (TBL24); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 23 (TAIR:AT4G11090.1); Has 1329 Blast hits to 1312 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1325; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12387631..12389908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118510.4 → NP_194110.2  TRICHOME BIREFRINGENCE-LIKE 24 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194110.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H1R3, Q9SUP8
    UniProtKB/TrEMBL
    A0A178UXI7, A0A346P849, A0A7G2F0D3
    Conserved Domains (2) summary
    pfam13839
    Location:132 → 426
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:77 → 130
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1R3.1

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