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GH9B15 glycosyl hydrolase 9B15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828456, updated on 18-Sep-2024

Summary

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Official Symbol
GH9B15
Official Full Name
glycosyl hydrolase 9B15
Primary source
TAIR:AT4G23560
Locus tag
AT4G23560
See related
Araport:AT4G23560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9B15; F9D16.30; F9D16_30; glycosyl hydrolase 9B15
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Genomic context

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See GH9B15 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (12293117..12295859, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ROH1, putative (DUF793) Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene WRKY family transcription factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene phosphatase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118487.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9B15
NP_194087.1
  • glycosyl hydrolase 9B15 (GH9B15); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B14 (TAIR:AT4G09740.1); Has 1874 Blast hits to 1863 proteins in 270 species: Archae - 2; Bacteria - 707; Metazoa - 184; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12293117..12295859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118487.4 → NP_194087.1  glycosyl hydrolase 9B15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194087.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SUS0
    UniProtKB/TrEMBL
    A0A178V5Q9, A0A654FS70
    Conserved Domains (1) summary
    PLN02613
    Location:1 → 475
    PLN02613; endoglucanase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUS0.1

Gene LinkOut

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