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transmembrane protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828434, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF239)
Primary source
TAIR:AT4G23350
Locus tag
AT4G23350
See related
Araport:AT4G23350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16G20.50; F16G20_50
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (12197307..12199224, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene carboxyl-terminal peptidase Neighboring gene carboxyl-terminal peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118464.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF239)
NP_194066.2
  • Protein of Unknown Function (DUF239); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 707 Blast hits to 664 proteins in 26 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 10; Plants - 686; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12197307..12199224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118464.4 → NP_194066.2  transmembrane protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194066.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XV32, A0A654FS22, F4JNI5
    Conserved Domains (2) summary
    pfam03080
    Location:176 → 399
    Neprosin
    pfam14365
    Location:53 → 142
    Neprosin_AP; Neprosin activation peptide
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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