Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Primary source: TAIR:AT4G22990
Locus tag: AT4G22990
See related: Araport:AT4G22990
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F7H19.170; F7H19_170
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 11

Sequence:: Chromosome: 4; NC_003075.7 (12048160..12051891, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

VPT3 (AT4G22990) contributes to cytosol-to-vacuole phosphate partitioning and reproductive development.
Title: Vacuolar Phosphate Transporters Contribute to Systemic Phosphate Homeostasis Vital for Reproductive Development in Arabidopsis.

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General gene information

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Homology

Orthologs from OrthoDB

NM_118428.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transmembrane phosphate ion transport from cytosol to vacuole	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within transmembrane phosphate ion transport from cytosol to vacuole	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in plant-type vacuole membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

NP_001190805.1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G11810.1).

NP_567674.1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G11810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

12048160..12051891 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001203876.2 → NP_001190805.1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190805.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UUH7, A0A384KIR2, A0A654FRW9, F4JMQ7

Conserved Domains (2) summary

cd14479
Location:2 → 141

SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain

cl28910
Location:249 → 699

MFS; Major Facilitator Superfamily
NM_001341571.1 → NP_001328313.1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UUH7, A0A384KIR2, A0A654FRW9, F4JMQ7

Conserved Domains (2) summary

cd14479
Location:2 → 141

SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain

cl28910
Location:249 → 699

MFS; Major Facilitator Superfamily
NM_118428.3 → NP_567674.1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567674.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O82747, Q93ZQ5

UniProtKB/TrEMBL

A0A178UWJ9, A0A654FRW9

Conserved Domains (4) summary

cd06174
Location:259 → 434

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

cd14479
Location:2 → 141

SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain

pfam03105
Location:4 → 145

SPX; SPX domain

pfam07690
Location:256 → 642

MFS_1; Major Facilitator Superfamily