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phenazine biosynthesis PhzC/PhzF family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828160, updated on 18-Sep-2024

Summary

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Official Full Name
phenazine biosynthesis PhzC/PhzF family protein
Primary source
TAIR:AT4G02850
Locus tag
AT4G02850
See related
Araport:AT4G02850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5J8.17; T5J8_17
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (1266463..1268612, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene Phenazine biosynthesis PhzC/PhzF protein Neighboring gene B3 domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovery of a novel amino acid racemase through exploration of natural variation in Arabidopsis thaliana. Strauch RC, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324904, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_116519.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables amino-acid racemase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phenazine biosynthesis PhzC/PhzF family protein
NP_192194.2
  • phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 3282 Blast hits to 3279 proteins in 1066 species: Archae - 40; Bacteria - 2414; Metazoa - 118; Fungi - 78; Plants - 90; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1266463..1268612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116519.2 → NP_192194.2  phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192194.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XPQ3, A0A654FLC9, Q66GM9
    Conserved Domains (1) summary
    pfam02567
    Location:14 → 302
    PhzC-PhzF; Phenazine biosynthesis-like protein
Nucleotide Protein
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