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B3 domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828152, updated on 18-Sep-2024

Summary

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Official Full Name
B3 domain protein
Primary source
TAIR:AT4G02870
Locus tag
AT4G02870
See related
Araport:AT4G02870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5J8.19; T5J8_19
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (1271654..1272746, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene phenazine biosynthesis PhzC/PhzF family protein Neighboring gene Phenazine biosynthesis PhzC/PhzF protein Neighboring gene ncRNA Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_116521.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B3 domain protein
NP_192196.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78640.1); Has 55 Blast hits to 51 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1271654..1272746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116521.1 → NP_192196.1  B3 domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192196.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SY12
    UniProtKB/TrEMBL
    A0A178UYE6
    Conserved Domains (1) summary
    cd10017
    Location:191 → 298
    B3_DNA; Plant-specific B3-DNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SY12.1

Gene LinkOut

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