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PIT1 RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828146, updated on 18-Sep-2024

Summary

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Official Symbol
PIT1
Official Full Name
RING/FYVE/PHD zinc finger superfamily protein
Primary source
TAIR:AT4G02075
Locus tag
AT4G02075
See related
Araport:AT4G02075
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
pitchoun 1
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Genomic context

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See PIT1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (913334..916509, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene Minichromosome maintenance (MCM2/3/5) family protein Neighboring gene MUTS homolog 6 Neighboring gene secretion-associated RAS super family 2 Neighboring gene multidrug resistance protein ABC transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340359.1
NM_001340360.1
NM_116439.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
RING/FYVE/PHD zinc finger superfamily protein
NP_567222.1
  • pitchoun 1 (PIT1); FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G02610.1); Has 1559 Blast hits to 1554 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 678; Fungi - 105; Plants - 585; Viruses - 28; Other Eukaryotes - 163 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    913334..916509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116439.3 → NP_567222.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567222.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XP42, A0A654FL29, Q9XF50
    Conserved Domains (3) summary
    smart00744
    Location:20 → 65
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
    cd16495
    Location:20 → 65
    RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
    pfam12428
    Location:72 → 176
    DUF3675; Protein of unknown function (DUF3675)

  2. NM_001340360.1 → NP_001329351.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7F7, A0A5S9XP42

  3. NM_001340359.1 → NP_001329350.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7F8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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