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Polyketide cyclase / dehydrase and lipid transport protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828138, updated on 18-Sep-2024

Summary

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Official Full Name
Polyketide cyclase / dehydrase and lipid transport protein
Primary source
TAIR:AT4G01650
Locus tag
AT4G01650
See related
Araport:AT4G01650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T15B16.3; T15B16_3
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (704377..707045, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene expansin A17 Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene ABC transporter 1 Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340333.1
NM_116395.2
NM_178951.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Polyketide cyclase / dehydrase and lipid transport protein
NP_192074.1
  • Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 410 Blast hits to 381 proteins in 74 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
NP_849282.1
  • Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 410 Blast hits to 381 proteins in 74 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    704377..707045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116395.2 → NP_192074.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192074.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9M120, Q9ZSI3
    Conserved Domains (1) summary
    cd08866
    Location:117 → 279
    SRPBCC_11; Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

  2. NM_178951.2 → NP_849282.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849282.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q84VW2
    Conserved Domains (1) summary
    cd08866
    Location:40 → 202
    SRPBCC_11; Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

  3. NM_001340333.1 → NP_001328327.1  Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4E3
Nucleotide Protein
Heading Accession and Version

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