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CTP synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828137, updated on 18-Sep-2024

Summary

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Official Full Name
CTP synthase family protein
Primary source
TAIR:AT4G02120
Locus tag
AT4G02120
See related
Araport:AT4G02120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10M13.13; T10M13_13
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Genomic context

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Location:
chromosome: 4
Exon count:
20
Sequence:
Chromosome: 4; NC_003075.7 (940721..944327)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene transcription coactivator Neighboring gene galacturonosyltransferase 6 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of filament-forming CTP synthases from Arabidopsis thaliana. Daumann M, et al. Plant J, 2018 Oct. PMID 30030857, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340363.1
NM_001340364.1
NM_001340365.1
NM_116444.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables CTP synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables CTP synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 'de novo' CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoophidium IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
CTP synthase family protein
NP_192121.2
  • CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT3G12670.1); Has 10891 Blast hits to 10859 proteins in 2938 species: Archae - 237; Bacteria - 5545; Metazoa - 255; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 4456 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    940721..944327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340362.1 → NP_001329021.1  CTP synthase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX17, A0A1P8B6F9

  2. NM_116444.4 → NP_192121.2  CTP synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192121.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UVT8, A0A178UX17, Q8L6Z9
    Conserved Domains (1) summary
    PLN02327
    Location:1 → 556
    PLN02327; CTP synthase

  3. NM_001340363.1 → NP_001329022.1  CTP synthase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX17, A0A1P8B6F8

  4. NM_001340364.1 → NP_001329019.1  CTP synthase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UX17, A0A1P8B6G0, A0A5S9XPY6

  5. NM_001340365.1 → NP_001329020.1  CTP synthase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6G6, O04252
Nucleotide Protein
Heading Accession and Version

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