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BSM Mitochondrial transcription termination factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828116, updated on 18-Sep-2024

Summary

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Official Symbol
BSM
Official Full Name
Mitochondrial transcription termination factor family protein
Primary source
TAIR:AT4G02990
Locus tag
AT4G02990
See related
Araport:AT4G02990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BELAYA SMERT; RUG2; RUGOSA 2; T4I9.13; T4I9_13
Summary
Encodes BELAYA SMERT (BSM), a plastid-localized protein homologous to mitochondrial transcription termination factors (mTERF) found in animal. Mutant bsm cells are albino, are compromised in growth, and suffer defects in global plastidic gene expression.
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Genomic context

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See BSM in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (1321758..1324062)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene 7SL RNA1 Neighboring gene endoplasmic reticulum auxin binding protein 1 Neighboring gene RING/U-box superfamily protein Neighboring gene RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis RUGOSA2 encodes an mTERF family member required for mitochondrion, chloroplast and leaf development. Quesada V, et al. Plant J, 2011 Nov. PMID 21790815
  2. Functional relationship between mTERF4 and GUN1 in retrograde signaling. Sun X, et al. J Exp Bot, 2016 Jun. PMID 26685190, Free PMC Article
  3. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Babiychuk E, et al. Proc Natl Acad Sci U S A, 2011 Apr 19. PMID 21464319, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001340410.1
NM_116533.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within developmental process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plastid rRNA transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within plastid transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Mitochondrial transcription termination factor family protein
NP_192208.1
  • Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G44020.1); Has 1500 Blast hits to 957 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 3; Plants - 1315; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1321758..1324062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116533.3 → NP_192208.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192208.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93WJ2, Q9ZT96
    UniProtKB/TrEMBL
    A0A5S9XPD5, A0A654FLF7
    Conserved Domains (1) summary
    PLN03196
    Location:60 → 512
    PLN03196; MOC1-like protein; Provisional

  2. NM_001340410.1 → NP_001329662.1  Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93WJ2, Q9ZT96
    UniProtKB/TrEMBL
    A0A5S9XPD5, A0A654FLF7
    Conserved Domains (1) summary
    PLN03196
    Location:60 → 512
    PLN03196; MOC1-like protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZT96.1

Gene LinkOut

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