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DNA-directed RNA polymerase III subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828101, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-directed RNA polymerase III subunit
Primary source
TAIR:AT4G01590
Locus tag
AT4G01590
See related
Araport:AT4G01590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T15B16.1; T15B16_1
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (688813..690460, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene GRAM domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036492.1
NM_001203723.2
NM_116390.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit
NP_001031569.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001190652.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1).
NP_192069.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    688813..690460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203723.2 → NP_001190652.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190652.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5Y9, Q9M123
    Conserved Domains (1) summary
    pfam11705
    Location:26 → 144
    RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31

  2. NM_001036492.1 → NP_001031569.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031569.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JG25

  3. NM_116390.3 → NP_192069.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192069.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5Y9, Q9M123
Nucleotide Protein
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